cis-eQTLs

This page contains the cis-eQTL results. The statistically significant cis-eQTLs and SMR-prioritised genes for several traits are browsable, the other files can be downloaded.

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Changelog
2019-12-23: Cis-eQTLs are now updated to have a 2-cohort filter: every cis-eQTL must be tested in at least 2 cohorts to be reported. The files now also include Bonferroni-adjusted p-values.
2018-10-19: Initial data release

Significant cis-eQTLs

SNP Gene Allele
P-value ID Chr Pos (hg19) ID Symbol Chr Pos (hg19) Z-score Assessed Other Nr Cohorts Nr Samples FDR
P-value ID Chr Pos ID Symbol Chr Pos Z-score Assessed Other Nr Cohorts Nr Samples FDR

SMR

Summary statistics based Mendelian Randomisation (SMR) is a statistical approach to infer putatively causal genes. Here you can download the cis-eQTL results in SMR format, as well as the results for the traits that we have looked at in the manuscript.

Downloads
SMR-prioritised gene lists

Allele frequencies

Download the allele frequencies for all tested SNPs here:
Allele frequencies based on 26,609 eQTLGen samples (excluding FHS)
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