STEMI scRNA-seq

Dataset

Gene expression data

Count matrices and metadata are available below. For more information on how to work with these, visit the GitHub page

Downloads

QC-ed raw gene expression counts (mtx format)
QC-ed genes for raw gene expression counts
QC-ed and SCT normalized counts (mtx format)
QC-ed genes for SCT normalized counts
QC-ed barcodes
metadata (including sample assignments, conditions and cell type assignments) for QC-ed barcodes
pre-QC raw gene expression counts (mtx format) for cells of STEMI donors
pre-QC genes for gene expression of cells of STEMI donors
pre-QC barcodes

Changelog


                        
                            2024-02-23: Initial data release

Raw data

Raw gene expression data is freely available and has been deposited at the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAD00001010064. To gain access to the genotype data, please contact Lifelines Data Management